{
    "cells": [
        {
            "cell_type": "code",
            "execution_count": 1,
            "metadata": {},
            "outputs": [
                {
                    "data": {
                        "text/plain": [
                            "'Here, we scrape PSCDB (protein Structural Change Database http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html'"
                        ]
                    },
                    "execution_count": 1,
                    "metadata": {},
                    "output_type": "execute_result"
                }
            ],
            "source": [
                "\"\"\"Here, we scrape PSCDB (protein Structural Change Database http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/index.html\"\"\""
            ]
        },
        {
            "cell_type": "code",
            "execution_count": 2,
            "metadata": {},
            "outputs": [
                {
                    "ename": "ModuleNotFoundError",
                    "evalue": "No module named 'rdkit'",
                    "output_type": "error",
                    "traceback": [
                        "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
                        "\u001b[0;31mModuleNotFoundError\u001b[0m                       Traceback (most recent call last)",
                        "\u001b[0;32m<ipython-input-2-e641122ac6ca>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[1;32m      1\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0mpandas\u001b[0m \u001b[0;32mas\u001b[0m \u001b[0mpd\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m----> 2\u001b[0;31m \u001b[0;32mimport\u001b[0m \u001b[0mrdkit\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m      3\u001b[0m \u001b[0;32mfrom\u001b[0m \u001b[0mBio\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mPDB\u001b[0m \u001b[0;32mimport\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
                        "\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'rdkit'"
                    ]
                }
            ],
            "source": [
                "import pandas as pd\n",
                "import rdkit\n",
                "from Bio.PDB import *"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": 3,
            "metadata": {
                "scrolled": true
            },
            "outputs": [
                {
                    "name": "stdout",
                    "output_type": "stream",
                    "text": [
                        "     index  PSCID                      Protein Name Free form Bound form  \\\n",
                        "0        0   CD.1  HYPOTHETICAL OXIDOREDUCTASE YIAK   1nxu_AB    1s20_AB   \n",
                        "1        1   CD.2                  ADENYLATE KINASE    4ake_A     2eck_A   \n",
                        "2        2   CD.3                       GLUCOKINASE   1q18_AB    1sz2_AB   \n",
                        "3        3   CD.4                       LACTOFERRIN    1lfh_A     1lfi_A   \n",
                        "4        4   CD.5               ELONGATION FACTOR 2    1n0v_D     1n0u_A   \n",
                        "..     ...    ...                               ...       ...        ...   \n",
                        "903     99  B.100   325AA LONG HYPOTHETICAL PROTEIN   2dec_AB    2df8_AB   \n",
                        "904    100  B.101                         LIPOCALIN    3bu9_A     3bu1_A   \n",
                        "905    101  B.102      AECTYLCITRULLINE DEACETYLASE   2f8h_AA    2f7v_AA   \n",
                        "906    102  B.103                 LIPOYLTRANSFERASE    2qht_A     2qhv_A   \n",
                        "907    103  B.104      RIBOSE 5-PHOSPHATE ISOMERASE   1uj4_AA    1uj5_AA   \n",
                        "\n",
                        "         Ligands  Classification(?)            motion_type  \n",
                        "0    2xNAD,2xTLA             200004  coupled_domain_motion  \n",
                        "1        ADP,AMP             200003  coupled_domain_motion  \n",
                        "2          2xBGC             200003  coupled_domain_motion  \n",
                        "3     2xCU,2xNAG             110103  coupled_domain_motion  \n",
                        "4            SO1             110002  coupled_domain_motion  \n",
                        "..           ...                ...                    ...  \n",
                        "903        2xF1P                 10           other_motion  \n",
                        "904          HSM                 10           other_motion  \n",
                        "905         2xCO                 10           other_motion  \n",
                        "906          OC9                 10           other_motion  \n",
                        "907        2x5RP                 10           other_motion  \n",
                        "\n",
                        "[908 rows x 8 columns]\n"
                    ]
                }
            ],
            "source": [
                "coupled_domain_motion = pd.read_html(\"http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/cd.html\", header=0)[0]\n",
                "coupled_domain_motion['motion_type'] = 'coupled_domain_motion'\n",
                "\n",
                "independent_domain_motion = pd.read_html(\"http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/id.html\", header=0)[0]\n",
                "independent_domain_motion['motion_type'] = 'independent_domain_motion'\n",
                "\n",
                "coupled_local_motion = pd.read_html(\"http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/cl.html\", header=0)[0]\n",
                "coupled_local_motion['motion_type'] = 'coupled_local_motion'\n",
                "\n",
                "independent_local_motion = pd.read_html(\"http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/il.html\", header=0)[0]\n",
                "independent_local_motion['motion_type'] = 'independent_local_motion'\n",
                "\n",
                "burying_ligand_motion = pd.read_html(\"http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/b.html\", header=0)[0]\n",
                "burying_ligand_motion['motion_type'] = 'burying_ligand_motion'\n",
                "\n",
                "no_significant_motion = pd.read_html(\"http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/n.html\", header=0)[0]\n",
                "no_significant_motion['motion_type'] = 'no_significant_motion'\n",
                "\n",
                "other_motion = pd.read_html(\"http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/b.html\", header=0)[0]\n",
                "other_motion['motion_type'] = 'other_motion'\n",
                "\n",
                "structural_rearrangement_data = pd.concat([coupled_domain_motion, independent_domain_motion,\n",
                "                                           coupled_local_motion, independent_local_motion,\n",
                "                                           burying_ligand_motion, no_significant_motion, other_motion]).reset_index()\n",
                "print(structural_rearrangement_data)"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": 32,
            "metadata": {},
            "outputs": [
                {
                    "name": "stdout",
                    "output_type": "stream",
                    "text": [
                        "     level_0  index  PSCID                      Protein Name Free form  \\\n",
                        "0          0      0   CD.1  HYPOTHETICAL OXIDOREDUCTASE YIAK   1nxu_AB   \n",
                        "1          1      1   CD.2                  ADENYLATE KINASE    4ake_A   \n",
                        "2          2      2   CD.3                       GLUCOKINASE   1q18_AB   \n",
                        "3          3      3   CD.4                       LACTOFERRIN    1lfh_A   \n",
                        "4          4      4   CD.5               ELONGATION FACTOR 2    1n0v_D   \n",
                        "..       ...    ...    ...                               ...       ...   \n",
                        "900      903     99  B.100   325AA LONG HYPOTHETICAL PROTEIN   2dec_AB   \n",
                        "901      904    100  B.101                         LIPOCALIN    3bu9_A   \n",
                        "902      905    101  B.102      AECTYLCITRULLINE DEACETYLASE   2f8h_AA   \n",
                        "903      906    102  B.103                 LIPOYLTRANSFERASE    2qht_A   \n",
                        "904      907    103  B.104      RIBOSE 5-PHOSPHATE ISOMERASE   1uj4_AA   \n",
                        "\n",
                        "    Bound form      Ligands  Classification(?)            motion_type  \\\n",
                        "0      1s20_AB  2xNAD,2xTLA             200004  coupled_domain_motion   \n",
                        "1       2eck_A      ADP,AMP             200003  coupled_domain_motion   \n",
                        "2      1sz2_AB        2xBGC             200003  coupled_domain_motion   \n",
                        "3       1lfi_A   2xCU,2xNAG             110103  coupled_domain_motion   \n",
                        "4       1n0u_A          SO1             110002  coupled_domain_motion   \n",
                        "..         ...          ...                ...                    ...   \n",
                        "900    2df8_AB        2xF1P                 10           other_motion   \n",
                        "901     3bu1_A          HSM                 10           other_motion   \n",
                        "902    2f7v_AA         2xCO                 10           other_motion   \n",
                        "903     2qhv_A          OC9                 10           other_motion   \n",
                        "904    1uj5_AA        2x5RP                 10           other_motion   \n",
                        "\n",
                        "    Free PDB Free Chains Bound PDB Bound Chains  \n",
                        "0       1nxu          AB      1s20           AB  \n",
                        "1       4ake           A      2eck            A  \n",
                        "2       1q18          AB      1sz2           AB  \n",
                        "3       1lfh           A      1lfi            A  \n",
                        "4       1n0v           D      1n0u            A  \n",
                        "..       ...         ...       ...          ...  \n",
                        "900     2dec          AB      2df8           AB  \n",
                        "901     3bu9           A      3bu1            A  \n",
                        "902     2f8h          AA      2f7v           AA  \n",
                        "903     2qht           A      2qhv            A  \n",
                        "904     1uj4          AA      1uj5           AA  \n",
                        "\n",
                        "[891 rows x 13 columns]\n"
                    ]
                }
            ],
            "source": [
                "# Split into chains\n",
                "free_structures = structural_rearrangement_data['Free form'].str.split('_', expand=True)\n",
                "bound_structures = structural_rearrangement_data['Bound form'].str.split('_', expand=True)\n",
                "\n",
                "# Add columns\n",
                "structural_rearrangement_data['Free PDB'] = free_structures[0]\n",
                "structural_rearrangement_data['Free Chains'] = free_structures[1]\n",
                "structural_rearrangement_data['Bound PDB'] = bound_structures[0]\n",
                "structural_rearrangement_data['Bound Chains'] = bound_structures[1]\n",
                "\n",
                "# Drop obsolete structures\n",
                "obsolete = ['1m80', '1cmw', '1g40', '2ihi', '1hl0', '2gkq', '2glb', '2g2j', '2dpo', '2h98', '2gu9', '2bg1', '1q4o', '1il5', '3cey', '1yks']\n",
                "\n",
                "structural_rearrangement_data = structural_rearrangement_data.loc[~structural_rearrangement_data['Free PDB'].isin(obsolete)]\n",
                "structural_rearrangement_data = structural_rearrangement_data.loc[~structural_rearrangement_data['Bound PDB'].isin(obsolete)]\n",
                "\n",
                "print(structural_rearrangement_data)\n",
                "#structural_rearrangement_data.reset_index(inplace=True)\n",
                "structural_rearrangement_data.to_csv('structural_rearrangement_data.csv')"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": null,
            "metadata": {},
            "outputs": [],
            "source": [
                "# Download PDBs"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": 29,
            "metadata": {
                "scrolled": true
            },
            "outputs": [
                {
                    "name": "stdout",
                    "output_type": "stream",
                    "text": [
                        "Downloading PDB structure '1nxu'...\n",
                        "Downloading PDB structure '4ake'...\n",
                        "Downloading PDB structure '1q18'...\n",
                        "Downloading PDB structure '1lfh'...\n",
                        "Downloading PDB structure '1n0v'...\n",
                        "Downloading PDB structure '5csc'...\n",
                        "Downloading PDB structure '2p0m'...\n",
                        "Downloading PDB structure '3cze'...\n",
                        "Downloading PDB structure '2bjb'...\n",
                        "Downloading PDB structure '2ex0'...\n",
                        "Downloading PDB structure '1oen'...\n",
                        "Downloading PDB structure '2car'...\n",
                        "Downloading PDB structure '2pry'...\n",
                        "Downloading PDB structure '1d2r'...\n",
                        "Downloading PDB structure '2gg4'...\n",
                        "Downloading PDB structure '1gqz'...\n",
                        "Downloading PDB structure '1qzt'...\n",
                        "Downloading PDB structure '1pn2'...\n",
                        "Downloading PDB structure '2nrb'...\n",
                        "Downloading PDB structure '1t8p'...\n",
                        "Downloading PDB structure '1vh3'...\n",
                        "Downloading PDB structure '2gca'...\n",
                        "Downloading PDB structure '1yz5'...\n",
                        "Downloading PDB structure '1y2q'...\n",
                        "Downloading PDB structure '2e2n'...\n",
                        "Downloading PDB structure '1sjs'...\n",
                        "Downloading PDB structure '1xk7'...\n",
                        "Downloading PDB structure '2f7m'...\n",
                        "Downloading PDB structure '2znd'...\n",
                        "Downloading PDB structure '1x0a'...\n",
                        "Downloading PDB structure '1oid'...\n",
                        "Downloading PDB structure '3d8r'...\n",
                        "Downloading PDB structure '1zty'...\n",
                        "Downloading PDB structure '1z15'...\n",
                        "Downloading PDB structure '1l5t'...\n",
                        "Downloading PDB structure '2ghb'...\n",
                        "Downloading PDB structure '2uvg'...\n",
                        "Downloading PDB structure '2c00'...\n",
                        "Downloading PDB structure '1zkb'...\n",
                        "Downloading PDB structure '1ex6'...\n",
                        "Downloading PDB structure '3c6q'...\n",
                        "Downloading PDB structure '2q5r'...\n",
                        "Downloading PDB structure '1lio'...\n",
                        "Downloading PDB structure '2h98'...\n",
                        "Downloading PDB structure '1xgd'...\n",
                        "Downloading PDB structure '2brw'...\n",
                        "Downloading PDB structure '1jej'...\n",
                        "Downloading PDB structure '2cgk'...\n",
                        "Downloading PDB structure '1a48'...\n",
                        "Downloading PDB structure '2qrj'...\n",
                        "Downloading PDB structure '2ous'...\n",
                        "Downloading PDB structure '1fwl'...\n",
                        "Downloading PDB structure '1yhk'...\n",
                        "Downloading PDB structure '1eym'...\n",
                        "Downloading PDB structure '1meo'...\n",
                        "Downloading PDB structure '2q50'...\n",
                        "Downloading PDB structure '1yj4'...\n",
                        "Downloading PDB structure '2cbi'...\n",
                        "Downloading PDB structure '1sbq'...\n",
                        "Downloading PDB structure '1g7r'...\n",
                        "Downloading PDB structure '1bbw'...\n",
                        "Downloading PDB structure '1h4v'...\n",
                        "Downloading PDB structure '2olu'...\n",
                        "Downloading PDB structure '2ns7'...\n",
                        "Downloading PDB structure '1o17'...\n",
                        "Downloading PDB structure '1m80'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1z9u'...\n",
                        "Downloading PDB structure '2hni'...\n",
                        "Downloading PDB structure '1e0d'...\n",
                        "Downloading PDB structure '1ynf'...\n",
                        "Downloading PDB structure '1vgt'...\n",
                        "Downloading PDB structure '2nxc'...\n",
                        "Downloading PDB structure '1l7d'...\n",
                        "Downloading PDB structure '2gk7'...\n",
                        "Downloading PDB structure '1fmv'...\n",
                        "Downloading PDB structure '2gt1'...\n",
                        "Downloading PDB structure '1cmw'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2o1p'...\n",
                        "Downloading PDB structure '1w2f'...\n",
                        "Downloading PDB structure '2qmr'...\n",
                        "Downloading PDB structure '2fh4'...\n",
                        "Downloading PDB structure '1smt'...\n",
                        "Downloading PDB structure '1tqd'...\n",
                        "Downloading PDB structure '2pkf'...\n",
                        "Downloading PDB structure '2o5p'...\n",
                        "Downloading PDB structure '3csg'...\n",
                        "Downloading PDB structure '2gf7'...\n",
                        "Downloading PDB structure '2ec5'...\n",
                        "Downloading PDB structure '1j8t'...\n",
                        "Downloading PDB structure '1e4f'...\n",
                        "Downloading PDB structure '2ps3'...\n",
                        "Downloading PDB structure '1gu7'...\n",
                        "Downloading PDB structure '1bet'...\n",
                        "Downloading PDB structure '1r5d'...\n",
                        "Downloading PDB structure '1g40'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2hyg'...\n",
                        "Downloading PDB structure '1eut'...\n",
                        "Downloading PDB structure '1qmt'...\n",
                        "Downloading PDB structure '3eug'...\n",
                        "Downloading PDB structure '1wxx'...\n",
                        "Downloading PDB structure '1fzr'...\n",
                        "Downloading PDB structure '1ogb'...\n",
                        "Downloading PDB structure '1dpg'...\n",
                        "Downloading PDB structure '1r0s'...\n",
                        "Downloading PDB structure '2cfo'...\n",
                        "Downloading PDB structure '2i78'...\n",
                        "Downloading PDB structure '1lr9'...\n",
                        "Downloading PDB structure '1dcl'...\n",
                        "Downloading PDB structure '1jyu'...\n",
                        "Downloading PDB structure '3ezm'...\n",
                        "Downloading PDB structure '2qza'...\n",
                        "Downloading PDB structure '3c3b'...\n",
                        "Downloading PDB structure '2zc2'...\n",
                        "Downloading PDB structure '3deo'...\n",
                        "Downloading PDB structure '2v8i'...\n",
                        "Downloading PDB structure '2vj2'...\n",
                        "Downloading PDB structure '1rki'...\n",
                        "Downloading PDB structure '3b8s'...\n",
                        "Downloading PDB structure '2ddb'...\n",
                        "Downloading PDB structure '1oxs'...\n",
                        "Downloading PDB structure '2j4r'...\n",
                        "Downloading PDB structure '1uk2'...\n",
                        "Downloading PDB structure '2dpy'...\n",
                        "Downloading PDB structure '1g6y'...\n",
                        "Downloading PDB structure '2o1c'...\n",
                        "Downloading PDB structure '1g9u'...\n",
                        "Downloading PDB structure '1rif'...\n",
                        "Downloading PDB structure '2rjc'...\n",
                        "Downloading PDB structure '1uln'...\n",
                        "Downloading PDB structure '1wpo'...\n",
                        "Downloading PDB structure '2qm8'...\n",
                        "Downloading PDB structure '1wd8'...\n",
                        "Downloading PDB structure '1dg3'...\n",
                        "Downloading PDB structure '3enl'...\n",
                        "Downloading PDB structure '1vk3'...\n",
                        "Downloading PDB structure '2g67'...\n",
                        "Downloading PDB structure '3bwb'...\n",
                        "Downloading PDB structure '2cn2'...\n",
                        "Downloading PDB structure '1ywf'...\n",
                        "Downloading PDB structure '2gp7'...\n",
                        "Downloading PDB structure '1kp9'...\n",
                        "Downloading PDB structure '1sqe'...\n",
                        "Downloading PDB structure '1pa1'...\n",
                        "Downloading PDB structure '1so7'...\n",
                        "Downloading PDB structure '2de2'...\n",
                        "Downloading PDB structure '2go1'...\n",
                        "Downloading PDB structure '2e3c'...\n",
                        "Downloading PDB structure '1irm'...\n",
                        "Downloading PDB structure '2vcl'...\n",
                        "Downloading PDB structure '2btz'...\n",
                        "Downloading PDB structure '2osw'...\n",
                        "Downloading PDB structure '1x56'...\n",
                        "Downloading PDB structure '1ofp'...\n",
                        "Downloading PDB structure '2qt8'...\n",
                        "Downloading PDB structure '2q0d'...\n",
                        "Downloading PDB structure '1qme'...\n",
                        "Downloading PDB structure '2zcg'...\n",
                        "Downloading PDB structure '1gyn'...\n",
                        "Downloading PDB structure '1kn9'...\n",
                        "Downloading PDB structure '3b7y'...\n",
                        "Downloading PDB structure '2amj'...\n",
                        "Downloading PDB structure '2dka'...\n",
                        "Downloading PDB structure '2rkt'...\n",
                        "Downloading PDB structure '1fdp'...\n",
                        "Downloading PDB structure '2vxm'...\n",
                        "Downloading PDB structure '1lhp'...\n",
                        "Downloading PDB structure '1xxo'...\n",
                        "Downloading PDB structure '1ufp'...\n",
                        "Downloading PDB structure '1h6o'...\n",
                        "Downloading PDB structure '1pu5'...\n",
                        "Downloading PDB structure '1rlr'...\n",
                        "Downloading PDB structure '1pnz'...\n",
                        "Downloading PDB structure '1bs0'...\n",
                        "Downloading PDB structure '1imf'...\n",
                        "Downloading PDB structure '1sgz'...\n",
                        "Downloading PDB structure '1mss'...\n",
                        "Downloading PDB structure '1n2o'...\n",
                        "Downloading PDB structure '1h7s'...\n",
                        "Downloading PDB structure '2qpq'...\n",
                        "Downloading PDB structure '1aja'...\n",
                        "Downloading PDB structure '1zvw'...\n",
                        "Downloading PDB structure '2ywe'...\n",
                        "Downloading PDB structure '2gyy'...\n",
                        "Downloading PDB structure '2f9t'...\n",
                        "Downloading PDB structure '1k5h'...\n",
                        "Downloading PDB structure '2iyt'...\n",
                        "Downloading PDB structure '2fb9'...\n",
                        "Downloading PDB structure '1xja'...\n",
                        "Downloading PDB structure '1pzt'...\n",
                        "Downloading PDB structure '1b6b'...\n",
                        "Downloading PDB structure '1dqz'...\n",
                        "Downloading PDB structure '1kx9'...\n",
                        "Downloading PDB structure '2z1c'...\n",
                        "Downloading PDB structure '2gu9'...\n",
                        "Downloading PDB structure '1zuh'...\n",
                        "Downloading PDB structure '3seb'...\n",
                        "Downloading PDB structure '2zlb'...\n",
                        "Downloading PDB structure '3bqh'...\n",
                        "Downloading PDB structure '2f4b'...\n",
                        "Downloading PDB structure '1jfv'...\n",
                        "Downloading PDB structure '1nzu'...\n",
                        "Downloading PDB structure '1ww7'...\n",
                        "Downloading PDB structure '1kt9'...\n",
                        "Downloading PDB structure '1nxm'...\n",
                        "Downloading PDB structure '2hv6'...\n",
                        "Downloading PDB structure '2o0k'...\n",
                        "Downloading PDB structure '1bhs'...\n",
                        "Downloading PDB structure '1tib'...\n",
                        "Downloading PDB structure '1gqn'...\n",
                        "Downloading PDB structure '1vjs'...\n",
                        "Downloading PDB structure '1hz6'...\n",
                        "Downloading PDB structure '2gt2'...\n",
                        "Downloading PDB structure '2i4l'...\n",
                        "Downloading PDB structure '2og6'...\n",
                        "Downloading PDB structure '2p52'...\n",
                        "Downloading PDB structure '1l7o'...\n",
                        "Downloading PDB structure '1ey0'...\n",
                        "Downloading PDB structure '1n00'...\n",
                        "Downloading PDB structure '1bsq'...\n",
                        "Downloading PDB structure '1r1c'...\n",
                        "Downloading PDB structure '2z8n'...\n",
                        "Downloading PDB structure '1t2w'...\n",
                        "Downloading PDB structure '2vrk'...\n",
                        "Downloading PDB structure '2b7k'...\n",
                        "Downloading PDB structure '1ujm'...\n",
                        "Downloading PDB structure '2epl'...\n",
                        "Downloading PDB structure '2r4i'...\n",
                        "Downloading PDB structure '1smk'...\n",
                        "Downloading PDB structure '2rda'...\n",
                        "Downloading PDB structure '1qat'...\n",
                        "Downloading PDB structure '1wdp'...\n",
                        "Downloading PDB structure '2j24'...\n",
                        "Downloading PDB structure '3ei7'...\n",
                        "Downloading PDB structure '2zco'...\n",
                        "Downloading PDB structure '1jez'...\n",
                        "Downloading PDB structure '1x0v'...\n",
                        "Downloading PDB structure '1i6w'...\n",
                        "Downloading PDB structure '2ze4'...\n",
                        "Downloading PDB structure '2dps'...\n",
                        "Downloading PDB structure '1rn4'...\n",
                        "Downloading PDB structure '2b4v'...\n",
                        "Downloading PDB structure '2on3'...\n",
                        "Downloading PDB structure '1mqr'...\n",
                        "Downloading PDB structure '1rjf'...\n",
                        "Downloading PDB structure '2c9r'...\n",
                        "Downloading PDB structure '2bgq'...\n",
                        "Downloading PDB structure '1m22'...\n",
                        "Downloading PDB structure '2vf4'...\n",
                        "Downloading PDB structure '1fo8'...\n",
                        "Downloading PDB structure '2q18'...\n",
                        "Downloading PDB structure '1tqi'...\n",
                        "Downloading PDB structure '1jxh'...\n",
                        "Downloading PDB structure '1nsj'...\n",
                        "Downloading PDB structure '2etv'...\n",
                        "Downloading PDB structure '2bce'...\n",
                        "Downloading PDB structure '1rba'...\n",
                        "Downloading PDB structure '1s0g'...\n",
                        "Downloading PDB structure '2ihi'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2f8s'...\n",
                        "Downloading PDB structure '1goh'...\n",
                        "Downloading PDB structure '1yuy'...\n",
                        "Downloading PDB structure '2p7l'...\n",
                        "Downloading PDB structure '1m47'...\n",
                        "Downloading PDB structure '1vde'...\n",
                        "Downloading PDB structure '2qct'...\n",
                        "Downloading PDB structure '1kzh'...\n",
                        "Downloading PDB structure '3bok'...\n",
                        "Downloading PDB structure '1ymy'...\n",
                        "Downloading PDB structure '2e3m'...\n",
                        "Downloading PDB structure '1tws'...\n",
                        "Downloading PDB structure '1f8n'...\n",
                        "Downloading PDB structure '1sry'...\n",
                        "Downloading PDB structure '1jop'...\n",
                        "Downloading PDB structure '1rxt'...\n",
                        "Downloading PDB structure '1u6e'...\n",
                        "Downloading PDB structure '1xyf'...\n",
                        "Downloading PDB structure '3c8v'...\n",
                        "Downloading PDB structure '2dwq'...\n",
                        "Downloading PDB structure '2orx'...\n",
                        "Downloading PDB structure '1lyy'...\n",
                        "Downloading PDB structure '3e59'...\n",
                        "Downloading PDB structure '1zy4'...\n",
                        "Downloading PDB structure '2dh3'...\n",
                        "Downloading PDB structure '1jde'...\n",
                        "Downloading PDB structure '2ofj'...\n",
                        "Downloading PDB structure '2v6f'...\n",
                        "Downloading PDB structure '2bg1'...\n",
                        "Downloading PDB structure '1mw9'...\n",
                        "Downloading PDB structure '1tr9'...\n",
                        "Downloading PDB structure '2imo'...\n",
                        "Downloading PDB structure '1qzq'...\n",
                        "Downloading PDB structure '2zig'...\n",
                        "Downloading PDB structure '2dul'...\n",
                        "Downloading PDB structure '1uzq'...\n",
                        "Downloading PDB structure '2fjy'...\n",
                        "Downloading PDB structure '2f6p'...\n",
                        "Downloading PDB structure '3bgu'...\n",
                        "Downloading PDB structure '2dke'...\n",
                        "Downloading PDB structure '2qfd'...\n",
                        "Downloading PDB structure '2ci3'...\n",
                        "Downloading PDB structure '2jdw'...\n",
                        "Downloading PDB structure '1ivn'...\n",
                        "Downloading PDB structure '1pvw'...\n",
                        "Downloading PDB structure '2pqi'...\n",
                        "Downloading PDB structure '1xe8'...\n",
                        "Downloading PDB structure '2e0k'...\n",
                        "Downloading PDB structure '1a3h'...\n",
                        "Downloading PDB structure '2znb'...\n",
                        "Downloading PDB structure '2pgx'...\n",
                        "Downloading PDB structure '1ds0'...\n",
                        "Downloading PDB structure '1q4o'...\n",
                        "Downloading PDB structure '2fss'...\n",
                        "Downloading PDB structure '1t2u'...\n",
                        "Downloading PDB structure '3c2h'...\n",
                        "Downloading PDB structure '2cz9'...\n",
                        "Downloading PDB structure '2nrt'...\n",
                        "Downloading PDB structure '1br8'...\n",
                        "Downloading PDB structure '1h8n'...\n",
                        "Downloading PDB structure '1h3i'...\n",
                        "Downloading PDB structure '1hka'...\n",
                        "Downloading PDB structure '2f1w'...\n",
                        "Downloading PDB structure '2fz6'...\n",
                        "Downloading PDB structure '1q31'...\n",
                        "Downloading PDB structure '1l0w'...\n",
                        "Downloading PDB structure '1o7v'...\n",
                        "Downloading PDB structure '1pz9'...\n",
                        "Downloading PDB structure '2pyq'...\n",
                        "Downloading PDB structure '1k4k'...\n",
                        "Downloading PDB structure '2q7u'...\n",
                        "Downloading PDB structure '1vsm'...\n",
                        "Downloading PDB structure '1xti'...\n",
                        "Downloading PDB structure '1upl'...\n",
                        "Downloading PDB structure '1a8d'...\n",
                        "Downloading PDB structure '1yjl'...\n",
                        "Downloading PDB structure '2it9'...\n",
                        "Downloading PDB structure '1p92'...\n",
                        "Downloading PDB structure '2gol'...\n",
                        "Downloading PDB structure '3d97'...\n",
                        "Downloading PDB structure '2z7a'...\n",
                        "Downloading PDB structure '1m0z'...\n",
                        "Downloading PDB structure '1x2g'...\n",
                        "Downloading PDB structure '2fsj'...\n",
                        "Downloading PDB structure '1e8y'...\n",
                        "Downloading PDB structure '1ebu'...\n",
                        "Downloading PDB structure '2jkf'...\n",
                        "Downloading PDB structure '1n4d'...\n",
                        "Downloading PDB structure '2gzr'...\n",
                        "Downloading PDB structure '1thf'...\n",
                        "Downloading PDB structure '2oej'...\n",
                        "Downloading PDB structure '2jep'...\n",
                        "Downloading PDB structure '2ik9'...\n",
                        "Downloading PDB structure '2izp'...\n",
                        "Downloading PDB structure '1k0m'...\n",
                        "Downloading PDB structure '2uyr'...\n",
                        "Downloading PDB structure '2plf'...\n",
                        "Downloading PDB structure '2yx6'...\n",
                        "Downloading PDB structure '2rck'...\n",
                        "Downloading PDB structure '3c95'...\n",
                        "Downloading PDB structure '3d5u'...\n",
                        "Downloading PDB structure '2oew'...\n",
                        "Downloading PDB structure '2vns'...\n",
                        "Downloading PDB structure '1od4'...\n",
                        "Downloading PDB structure '1h7b'...\n",
                        "Downloading PDB structure '2qo2'...\n",
                        "Downloading PDB structure '1fcq'...\n",
                        "Downloading PDB structure '1g6l'...\n",
                        "Downloading PDB structure '1pbg'...\n",
                        "Downloading PDB structure '1pgs'...\n",
                        "Downloading PDB structure '1dkl'...\n",
                        "Downloading PDB structure '2pgy'...\n",
                        "Downloading PDB structure '2veg'...\n",
                        "Downloading PDB structure '1rpl'...\n",
                        "Downloading PDB structure '2znv'...\n",
                        "Downloading PDB structure '2ajg'...\n",
                        "Downloading PDB structure '1gxr'...\n",
                        "Downloading PDB structure '1f1s'...\n",
                        "Downloading PDB structure '2d5l'...\n",
                        "Downloading PDB structure '1tvl'...\n",
                        "Downloading PDB structure '3cgz'...\n",
                        "Downloading PDB structure '2qj3'...\n",
                        "Downloading PDB structure '2obl'...\n",
                        "Downloading PDB structure '1uoc'...\n",
                        "Downloading PDB structure '2ddm'...\n",
                        "Downloading PDB structure '2lkf'...\n",
                        "Downloading PDB structure '2qvl'...\n",
                        "Downloading PDB structure '2hp3'...\n",
                        "Downloading PDB structure '2i2w'...\n",
                        "Downloading PDB structure '2d2e'...\n",
                        "Downloading PDB structure '1w16'...\n",
                        "Downloading PDB structure '1obp'...\n",
                        "Downloading PDB structure '1na5'...\n",
                        "Downloading PDB structure '3wrp'...\n",
                        "Downloading PDB structure '2f08'...\n",
                        "Downloading PDB structure '2quk'...\n",
                        "Downloading PDB structure '2acf'...\n",
                        "Downloading PDB structure '2i7h'...\n",
                        "Downloading PDB structure '1ozt'...\n",
                        "Downloading PDB structure '1uu0'...\n",
                        "Downloading PDB structure '1beo'...\n",
                        "Downloading PDB structure '2sbt'...\n",
                        "Downloading PDB structure '1hxj'...\n",
                        "Downloading PDB structure '1gy0'...\n",
                        "Downloading PDB structure '1fqn'...\n",
                        "Downloading PDB structure '2qvk'...\n",
                        "Downloading PDB structure '1x8e'...\n",
                        "Downloading PDB structure '2qbv'...\n",
                        "Downloading PDB structure '2qzp'...\n",
                        "Downloading PDB structure '2c7i'...\n",
                        "Downloading PDB structure '2dg0'...\n",
                        "Downloading PDB structure '2zf3'...\n",
                        "Downloading PDB structure '2box'...\n",
                        "Downloading PDB structure '2av8'...\n",
                        "Downloading PDB structure '1jiq'...\n",
                        "Downloading PDB structure '1psr'...\n",
                        "Downloading PDB structure '2rca'...\n",
                        "Downloading PDB structure '2yrf'...\n",
                        "Downloading PDB structure '1iun'...\n",
                        "Downloading PDB structure '1f2v'...\n",
                        "Downloading PDB structure '2o70'...\n",
                        "Downloading PDB structure '2vb3'...\n",
                        "Downloading PDB structure '1avk'...\n",
                        "Downloading PDB structure '2vw0'...\n",
                        "Downloading PDB structure '1evq'...\n",
                        "Downloading PDB structure '2eaw'...\n",
                        "Downloading PDB structure '1mzl'...\n",
                        "Downloading PDB structure '1o9n'...\n",
                        "Downloading PDB structure '1jx1'...\n",
                        "Downloading PDB structure '2e7i'...\n",
                        "Downloading PDB structure '2oyc'...\n",
                        "Downloading PDB structure '1mdf'...\n",
                        "Downloading PDB structure '1w5r'...\n",
                        "Downloading PDB structure '2zr3'...\n",
                        "Downloading PDB structure '2iqy'...\n",
                        "Downloading PDB structure '2bkb'...\n",
                        "Downloading PDB structure '1vf8'...\n",
                        "Downloading PDB structure '1fhm'...\n",
                        "Downloading PDB structure '1usl'...\n",
                        "Downloading PDB structure '2fyo'...\n",
                        "Downloading PDB structure '2fp8'...\n",
                        "Downloading PDB structure '2g6v'...\n",
                        "Downloading PDB structure '3chi'...\n",
                        "Downloading PDB structure '2byw'...\n",
                        "Downloading PDB structure '2aej'...\n",
                        "Downloading PDB structure '1wac'...\n",
                        "Downloading PDB structure '1ncz'...\n",
                        "Downloading PDB structure '1arl'...\n",
                        "Downloading PDB structure '2f3n'...\n",
                        "Downloading PDB structure '1juk'...\n",
                        "Downloading PDB structure '2bw0'...\n",
                        "Downloading PDB structure '2yyv'...\n",
                        "Downloading PDB structure '2hkl'...\n",
                        "Downloading PDB structure '2oam'...\n",
                        "Downloading PDB structure '1kko'...\n",
                        "Downloading PDB structure '2o6f'...\n",
                        "Downloading PDB structure '1bt2'...\n",
                        "Downloading PDB structure '1lkp'...\n",
                        "Downloading PDB structure '1iad'...\n",
                        "Downloading PDB structure '2p76'...\n",
                        "Downloading PDB structure '2yu2'...\n",
                        "Downloading PDB structure '1l7r'...\n",
                        "Downloading PDB structure '2vzo'...\n",
                        "Downloading PDB structure '1dcd'...\n",
                        "Downloading PDB structure '2e3j'...\n",
                        "Downloading PDB structure '2qev'...\n",
                        "Downloading PDB structure '2vfw'...\n",
                        "Downloading PDB structure '1mkb'...\n",
                        "Downloading PDB structure '1fa8'...\n",
                        "Downloading PDB structure '3c6y'...\n",
                        "Downloading PDB structure '1qam'...\n",
                        "Downloading PDB structure '2veo'...\n",
                        "Downloading PDB structure '2i49'...\n",
                        "Downloading PDB structure '1tee'...\n",
                        "Downloading PDB structure '1hzt'...\n",
                        "Downloading PDB structure '1hl0'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1snz'...\n",
                        "Downloading PDB structure '1iiw'...\n",
                        "Downloading PDB structure '2b3l'...\n",
                        "Downloading PDB structure '2v28'...\n",
                        "Downloading PDB structure '1esc'...\n",
                        "Downloading PDB structure '2cwc'...\n",
                        "Downloading PDB structure '2a0k'...\n",
                        "Downloading PDB structure '2iw2'...\n",
                        "Downloading PDB structure '1ilw'...\n",
                        "Downloading PDB structure '3bbe'...\n",
                        "Downloading PDB structure '1l5n'...\n",
                        "Downloading PDB structure '3bf7'...\n",
                        "Downloading PDB structure '1tzb'...\n",
                        "Downloading PDB structure '1oi2'...\n",
                        "Downloading PDB structure '2dec'...\n",
                        "Downloading PDB structure '3bu9'...\n",
                        "Downloading PDB structure '2f8h'...\n",
                        "Downloading PDB structure '2qht'...\n",
                        "Downloading PDB structure '1uj4'...\n",
                        "Downloading PDB structure '1m14'...\n",
                        "Downloading PDB structure '1mix'...\n",
                        "Downloading PDB structure '1jrk'...\n",
                        "Downloading PDB structure '1w59'...\n",
                        "Downloading PDB structure '1g24'...\n",
                        "Downloading PDB structure '1vz0'...\n",
                        "Downloading PDB structure '2f6l'...\n",
                        "Downloading PDB structure '2idh'...\n",
                        "Downloading PDB structure '3dj1'...\n",
                        "Downloading PDB structure '2hhl'...\n",
                        "Downloading PDB structure '1w90'...\n",
                        "Downloading PDB structure '2j3p'...\n",
                        "Downloading PDB structure '2cua'...\n",
                        "Downloading PDB structure '1u4r'...\n",
                        "Downloading PDB structure '1i4s'...\n",
                        "Downloading PDB structure '1sza'...\n",
                        "Downloading PDB structure '1mmi'...\n",
                        "Downloading PDB structure '1jqq'...\n",
                        "Downloading PDB structure '1gaj'...\n",
                        "Downloading PDB structure '1gnu'...\n",
                        "Downloading PDB structure '5gal'...\n",
                        "Downloading PDB structure '1vll'...\n",
                        "Downloading PDB structure '3bzt'...\n",
                        "Downloading PDB structure '2q04'...\n",
                        "Downloading PDB structure '1il5'...\n",
                        "Downloading PDB structure '1wn2'...\n",
                        "Downloading PDB structure '2gkq'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2d59'...\n",
                        "Downloading PDB structure '1wns'...\n",
                        "Downloading PDB structure '2fcj'...\n",
                        "Downloading PDB structure '1uuj'...\n",
                        "Downloading PDB structure '2hts'...\n",
                        "Downloading PDB structure '1w1h'...\n",
                        "Downloading PDB structure '1yes'...\n",
                        "Downloading PDB structure '2h74'...\n",
                        "Downloading PDB structure '2c3g'...\n",
                        "Downloading PDB structure '2ok3'...\n",
                        "Downloading PDB structure '1m6t'...\n",
                        "Downloading PDB structure '1orb'...\n",
                        "Downloading PDB structure '1u8t'...\n",
                        "Downloading PDB structure '2bl7'...\n",
                        "Downloading PDB structure '2ccq'...\n",
                        "Downloading PDB structure '2pe8'...\n",
                        "Downloading PDB structure '1p9u'...\n",
                        "Downloading PDB structure '2z42'...\n",
                        "Downloading PDB structure '1nk1'...\n",
                        "Downloading PDB structure '2d2q'...\n",
                        "Downloading PDB structure '1l0h'...\n",
                        "Downloading PDB structure '1xze'...\n",
                        "Downloading PDB structure '2h68'...\n",
                        "Downloading PDB structure '2bis'...\n",
                        "Downloading PDB structure '1f46'...\n",
                        "Downloading PDB structure '2c3v'...\n",
                        "Downloading PDB structure '1i3c'...\n",
                        "Downloading PDB structure '1z52'...\n",
                        "Downloading PDB structure '1fil'...\n",
                        "Downloading PDB structure '1gnd'...\n",
                        "Downloading PDB structure '1yft'...\n",
                        "Downloading PDB structure '1ox8'...\n",
                        "Downloading PDB structure '2ecr'...\n",
                        "Downloading PDB structure '1r6k'...\n",
                        "Downloading PDB structure '1p5q'...\n",
                        "Downloading PDB structure '1jwf'...\n",
                        "Downloading PDB structure '2gvl'...\n",
                        "Downloading PDB structure '1k9x'...\n",
                        "Downloading PDB structure '2dcz'...\n",
                        "Downloading PDB structure '1xqv'...\n",
                        "Downloading PDB structure '1slc'...\n",
                        "Downloading PDB structure '2fs5'...\n",
                        "Downloading PDB structure '1yz4'...\n",
                        "Downloading PDB structure '1lwb'...\n",
                        "Downloading PDB structure '2d1z'...\n",
                        "Downloading PDB structure '2ckd'...\n",
                        "Downloading PDB structure '2hvf'...\n",
                        "Downloading PDB structure '1pp3'...\n",
                        "Downloading PDB structure '2bjw'...\n",
                        "Downloading PDB structure '2gty'...\n",
                        "Downloading PDB structure '2q5x'...\n",
                        "Downloading PDB structure '1knl'...\n",
                        "Downloading PDB structure '1lxt'...\n",
                        "Downloading PDB structure '2rad'...\n",
                        "Downloading PDB structure '1oee'...\n",
                        "Downloading PDB structure '1t7n'...\n",
                        "Downloading PDB structure '3c8n'...\n",
                        "Downloading PDB structure '1vhr'...\n",
                        "Downloading PDB structure '2zg2'...\n",
                        "Downloading PDB structure '2gxu'...\n",
                        "Downloading PDB structure '1gcu'...\n",
                        "Downloading PDB structure '1qim'...\n",
                        "Downloading PDB structure '4kiv'...\n",
                        "Downloading PDB structure '3e2j'...\n",
                        "Downloading PDB structure '1gxm'...\n",
                        "Downloading PDB structure '2cbm'...\n",
                        "Downloading PDB structure '2if8'...\n",
                        "Downloading PDB structure '2z2n'...\n",
                        "Downloading PDB structure '1ayf'...\n",
                        "Downloading PDB structure '1fbt'...\n",
                        "Downloading PDB structure '1cz3'...\n",
                        "Downloading PDB structure '1x2j'...\n",
                        "Downloading PDB structure '3dwh'...\n",
                        "Downloading PDB structure '1qpo'...\n",
                        "Downloading PDB structure '2awx'...\n",
                        "Downloading PDB structure '1wgc'...\n",
                        "Downloading PDB structure '2a6c'...\n",
                        "Downloading PDB structure '1b6w'...\n",
                        "Downloading PDB structure '1sqg'...\n",
                        "Downloading PDB structure '1u24'...\n",
                        "Downloading PDB structure '1glh'...\n",
                        "Downloading PDB structure '2huz'...\n",
                        "Downloading PDB structure '1f14'...\n",
                        "Downloading PDB structure '2iru'...\n",
                        "Downloading PDB structure '2h1v'...\n",
                        "Downloading PDB structure '1ew4'...\n",
                        "Downloading PDB structure '1jax'...\n",
                        "Downloading PDB structure '1wcv'...\n",
                        "Downloading PDB structure '1w79'...\n",
                        "Downloading PDB structure '1nh1'...\n",
                        "Downloading PDB structure '3cb6'...\n",
                        "Downloading PDB structure '1gyj'...\n",
                        "Downloading PDB structure '1zgr'...\n",
                        "Downloading PDB structure '1kpc'...\n",
                        "Downloading PDB structure '2byd'...\n",
                        "Downloading PDB structure '1cmb'...\n",
                        "Downloading PDB structure '1h09'...\n",
                        "Downloading PDB structure '3cyp'...\n",
                        "Downloading PDB structure '2nyh'...\n",
                        "Downloading PDB structure '2jfd'...\n",
                        "Downloading PDB structure '1ri5'...\n",
                        "Downloading PDB structure '2ii2'...\n",
                        "Downloading PDB structure '2i6i'...\n",
                        "Downloading PDB structure '1tw7'...\n",
                        "Downloading PDB structure '2atb'...\n",
                        "Downloading PDB structure '1n57'...\n",
                        "Downloading PDB structure '1qsa'...\n",
                        "Downloading PDB structure '1xnh'...\n",
                        "Downloading PDB structure '3cey'...\n",
                        "Downloading PDB structure '2obr'...\n",
                        "Downloading PDB structure '1ppn'...\n",
                        "Downloading PDB structure '1tje'...\n",
                        "Downloading PDB structure '1ah6'...\n",
                        "Downloading PDB structure '2eak'...\n",
                        "Downloading PDB structure '1wny'...\n",
                        "Downloading PDB structure '1f6y'...\n",
                        "Downloading PDB structure '1na8'...\n",
                        "Downloading PDB structure '1ayx'...\n",
                        "Downloading PDB structure '1h8u'...\n",
                        "Downloading PDB structure '1bk7'...\n",
                        "Downloading PDB structure '1k75'...\n",
                        "Downloading PDB structure '2r7f'...\n",
                        "Downloading PDB structure '1c3f'...\n",
                        "Downloading PDB structure '2raf'...\n",
                        "Downloading PDB structure '1w28'...\n",
                        "Downloading PDB structure '1r7i'...\n",
                        "Downloading PDB structure '2hzb'...\n",
                        "Downloading PDB structure '2vfx'...\n",
                        "Downloading PDB structure '3d9i'...\n",
                        "Downloading PDB structure '1j85'...\n",
                        "Downloading PDB structure '4ptd'...\n",
                        "Downloading PDB structure '1twd'...\n",
                        "Downloading PDB structure '1bdj'...\n",
                        "Downloading PDB structure '2f5g'...\n",
                        "Downloading PDB structure '1qjv'...\n",
                        "Downloading PDB structure '2qgq'...\n",
                        "Downloading PDB structure '2vfy'...\n",
                        "Downloading PDB structure '1ww8'...\n",
                        "Downloading PDB structure '3c8h'...\n",
                        "Downloading PDB structure '1r6j'...\n",
                        "Downloading PDB structure '1agj'...\n",
                        "Downloading PDB structure '1v8q'...\n",
                        "Downloading PDB structure '2d05'...\n",
                        "Downloading PDB structure '2r88'...\n",
                        "Downloading PDB structure '2eh1'...\n",
                        "Downloading PDB structure '1gy7'...\n",
                        "Downloading PDB structure '1l8f'...\n",
                        "Downloading PDB structure '2fao'...\n",
                        "Downloading PDB structure '1e9n'...\n",
                        "Downloading PDB structure '4mat'...\n",
                        "Downloading PDB structure '2j16'...\n",
                        "Downloading PDB structure '2hqq'...\n",
                        "Downloading PDB structure '1qj9'...\n",
                        "Downloading PDB structure '1ohd'...\n",
                        "Downloading PDB structure '2fbt'...\n",
                        "Downloading PDB structure '1vz2'...\n",
                        "Downloading PDB structure '3db4'...\n",
                        "Downloading PDB structure '1czt'...\n",
                        "Downloading PDB structure '2rem'...\n",
                        "Downloading PDB structure '1nl3'...\n",
                        "Downloading PDB structure '3c1z'...\n",
                        "Downloading PDB structure '1uyp'...\n",
                        "Downloading PDB structure '1wtj'...\n",
                        "Downloading PDB structure '1xxl'...\n",
                        "Downloading PDB structure '3bi9'...\n",
                        "Downloading PDB structure '1cqz'...\n",
                        "Downloading PDB structure '2hy7'...\n",
                        "Downloading PDB structure '2d0a'...\n",
                        "Downloading PDB structure '2uy2'...\n",
                        "Downloading PDB structure '1uc8'...\n",
                        "Downloading PDB structure '3sqc'...\n",
                        "Downloading PDB structure '2glb'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2pfl'...\n",
                        "Downloading PDB structure '2paw'...\n",
                        "Downloading PDB structure '2q4o'...\n",
                        "Downloading PDB structure '1lf6'...\n",
                        "Downloading PDB structure '1fe4'...\n",
                        "Downloading PDB structure '2ree'...\n",
                        "Downloading PDB structure '2q6z'...\n",
                        "Downloading PDB structure '2egt'...\n",
                        "Downloading PDB structure '1ut9'...\n",
                        "Downloading PDB structure '2gwm'...\n",
                        "Downloading PDB structure '1i7a'...\n",
                        "Downloading PDB structure '1qyo'...\n",
                        "Downloading PDB structure '2f1v'...\n",
                        "Downloading PDB structure '2bkn'...\n",
                        "Downloading PDB structure '1ogm'...\n",
                        "Downloading PDB structure '1f1m'...\n",
                        "Downloading PDB structure '2e4p'...\n",
                        "Downloading PDB structure '1ebb'...\n",
                        "Downloading PDB structure '1o9z'...\n",
                        "Downloading PDB structure '1l0x'...\n",
                        "Downloading PDB structure '2jhj'...\n",
                        "Downloading PDB structure '2cck'...\n",
                        "Downloading PDB structure '3crm'...\n",
                        "Downloading PDB structure '1plu'...\n",
                        "Downloading PDB structure '3eo4'...\n",
                        "Downloading PDB structure '1ll3'...\n",
                        "Downloading PDB structure '1na3'...\n",
                        "Downloading PDB structure '1ltu'...\n",
                        "Downloading PDB structure '3d59'...\n",
                        "Downloading PDB structure '1c3p'...\n",
                        "Downloading PDB structure '1qba'...\n",
                        "Downloading PDB structure '1l7j'...\n",
                        "Downloading PDB structure '2hzr'...\n",
                        "Downloading PDB structure '2e1y'...\n",
                        "Downloading PDB structure '1eg3'...\n",
                        "Downloading PDB structure '2d2r'...\n",
                        "Downloading PDB structure '1bia'...\n",
                        "Downloading PDB structure '2jcp'...\n",
                        "Downloading PDB structure '1b73'...\n",
                        "Downloading PDB structure '1va0'...\n",
                        "Downloading PDB structure '2fv0'...\n",
                        "Downloading PDB structure '1nw8'...\n",
                        "Downloading PDB structure '3b9n'...\n",
                        "Downloading PDB structure '1sgk'...\n",
                        "Downloading PDB structure '1v43'...\n",
                        "Downloading PDB structure '1dqg'...\n",
                        "Downloading PDB structure '2g2j'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2ghr'...\n",
                        "Downloading PDB structure '1xix'...\n",
                        "Downloading PDB structure '2v3j'...\n",
                        "Downloading PDB structure '1yks'...\n",
                        "Downloading PDB structure '1h9s'...\n",
                        "Downloading PDB structure '1edz'...\n",
                        "Downloading PDB structure '2hbj'...\n",
                        "Downloading PDB structure '2j0a'...\n",
                        "Downloading PDB structure '2vx4'...\n",
                        "Downloading PDB structure '3cxu'...\n",
                        "Downloading PDB structure '2g0a'...\n",
                        "Downloading PDB structure '1ty0'...\n",
                        "Downloading PDB structure '1cem'...\n",
                        "Downloading PDB structure '2jfu'...\n",
                        "Downloading PDB structure '1zs7'...\n",
                        "Downloading PDB structure '1kuf'...\n",
                        "Downloading PDB structure '1mpg'...\n",
                        "Downloading PDB structure '1q6h'...\n",
                        "Downloading PDB structure '2yvn'...\n",
                        "Downloading PDB structure '2p0f'...\n",
                        "Downloading PDB structure '3cj1'...\n",
                        "Downloading PDB structure '2bvy'...\n",
                        "Downloading PDB structure '2cb9'...\n",
                        "Downloading PDB structure '2hkn'...\n",
                        "Downloading PDB structure '1w17'...\n",
                        "Downloading PDB structure '1lbq'...\n",
                        "Downloading PDB structure '1wxd'...\n",
                        "Downloading PDB structure '1w9s'...\n",
                        "Downloading PDB structure '153l'...\n",
                        "Downloading PDB structure '2jh1'...\n",
                        "Downloading PDB structure '2e1u'...\n",
                        "Downloading PDB structure '1yd3'...\n",
                        "Downloading PDB structure '1tf5'...\n",
                        "Downloading PDB structure '2ciq'...\n",
                        "Downloading PDB structure '2pgd'...\n",
                        "Downloading PDB structure '1xw3'...\n",
                        "Downloading PDB structure '3csr'...\n",
                        "Downloading PDB structure '1smn'...\n",
                        "Downloading PDB structure '2dpo'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1obs'...\n",
                        "Downloading PDB structure '1wos'...\n",
                        "Downloading PDB structure '2nsg'...\n",
                        "Downloading PDB structure '1auo'...\n",
                        "Downloading PDB structure '2r57'...\n",
                        "Downloading PDB structure '1jly'...\n",
                        "Downloading PDB structure '1i9y'...\n",
                        "Downloading PDB structure '2fma'...\n",
                        "Downloading PDB structure '2r60'...\n",
                        "Downloading PDB structure '1g5r'...\n",
                        "Downloading PDB structure '1jsy'...\n",
                        "Downloading PDB structure '2r11'...\n",
                        "Downloading PDB structure '2g7e'...\n",
                        "Downloading PDB structure '1j23'...\n",
                        "Downloading PDB structure '2o4u'...\n",
                        "Downloading PDB structure '2vl3'...\n",
                        "Downloading PDB structure '3byl'...\n",
                        "Downloading PDB structure '1yqg'...\n",
                        "Downloading PDB structure '2c4k'...\n",
                        "Downloading PDB structure '2qtf'...\n",
                        "Downloading PDB structure '3eua'...\n",
                        "Downloading PDB structure '1hf8'...\n",
                        "Downloading PDB structure '3c7m'...\n",
                        "Downloading PDB structure '2q22'...\n",
                        "Downloading PDB structure '1g0z'...\n",
                        "Downloading PDB structure '2qb0'...\n",
                        "Downloading PDB structure '1s20'...\n",
                        "Downloading PDB structure '2eck'...\n",
                        "Downloading PDB structure '1sz2'...\n",
                        "Downloading PDB structure '1lfi'...\n",
                        "Downloading PDB structure '1n0u'...\n",
                        "Downloading PDB structure '6cts'...\n",
                        "Downloading PDB structure '3czk'...\n",
                        "Downloading PDB structure '2o0d'...\n",
                        "Downloading PDB structure '2ihz'...\n",
                        "Downloading PDB structure '2olr'...\n",
                        "Downloading PDB structure '2j4e'...\n",
                        "Downloading PDB structure '2prz'...\n",
                        "Downloading PDB structure '1m83'...\n",
                        "Downloading PDB structure '2pqc'...\n",
                        "Downloading PDB structure '2gke'...\n",
                        "Downloading PDB structure '2af3'...\n",
                        "Downloading PDB structure '1pn4'...\n",
                        "Downloading PDB structure '1o9l'...\n",
                        "Downloading PDB structure '2h4z'...\n",
                        "Downloading PDB structure '1jbw'...\n",
                        "Downloading PDB structure '1ywt'...\n",
                        "Downloading PDB structure '2hl0'...\n",
                        "Downloading PDB structure '2e2o'...\n",
                        "Downloading PDB structure '1pb1'...\n",
                        "Downloading PDB structure '1xvt'...\n",
                        "Downloading PDB structure '2f8z'...\n",
                        "Downloading PDB structure '2zn9'...\n",
                        "Downloading PDB structure '1vbi'...\n",
                        "Downloading PDB structure '1ho5'...\n",
                        "Downloading PDB structure '3d8n'...\n",
                        "Downloading PDB structure '1zu0'...\n",
                        "Downloading PDB structure '1z17'...\n",
                        "Downloading PDB structure '1lct'...\n",
                        "Downloading PDB structure '2gha'...\n",
                        "Downloading PDB structure '2uvi'...\n",
                        "Downloading PDB structure '2vqd'...\n",
                        "Downloading PDB structure '1jvy'...\n",
                        "Downloading PDB structure '1gky'...\n",
                        "Downloading PDB structure '2jg1'...\n",
                        "Downloading PDB structure '1lii'...\n",
                        "Downloading PDB structure '2h9q'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1ef3'...\n",
                        "Downloading PDB structure '1ojp'...\n",
                        "Downloading PDB structure '1qkj'...\n",
                        "Downloading PDB structure '2uyt'...\n",
                        "Downloading PDB structure '2cnq'...\n",
                        "Downloading PDB structure '2qrl'...\n",
                        "Downloading PDB structure '2ouu'...\n",
                        "Downloading PDB structure '1h72'...\n",
                        "Downloading PDB structure '1yhm'...\n",
                        "Downloading PDB structure '1j4r'...\n",
                        "Downloading PDB structure '1rby'...\n",
                        "Downloading PDB structure '2gcg'...\n",
                        "Downloading PDB structure '1yyr'...\n",
                        "Downloading PDB structure '2j62'...\n",
                        "Downloading PDB structure '1u3g'...\n",
                        "Downloading PDB structure '1g7t'...\n",
                        "Downloading PDB structure '1bbu'...\n",
                        "Downloading PDB structure '1ady'...\n",
                        "Downloading PDB structure '2olv'...\n",
                        "Downloading PDB structure '2ns8'...\n",
                        "Downloading PDB structure '1zxy'...\n",
                        "Downloading PDB structure '1bg0'...\n",
                        "Downloading PDB structure '1s7n'...\n",
                        "Downloading PDB structure '2dth'...\n",
                        "Downloading PDB structure '1eeh'...\n",
                        "Downloading PDB structure '1ynh'...\n",
                        "Downloading PDB structure '1i52'...\n",
                        "Downloading PDB structure '2nxe'...\n",
                        "Downloading PDB structure '1l7e'...\n",
                        "Downloading PDB structure '2gk6'...\n",
                        "Downloading PDB structure '1w9j'...\n",
                        "Downloading PDB structure '2h1f'...\n",
                        "Downloading PDB structure '1taq'...\n",
                        "Downloading PDB structure '2hhp'...\n",
                        "Downloading PDB structure '1w2d'...\n",
                        "Downloading PDB structure '2z5k'...\n",
                        "Downloading PDB structure '1p8x'...\n",
                        "Downloading PDB structure '1r22'...\n",
                        "Downloading PDB structure '1tq6'...\n",
                        "Downloading PDB structure '2pkn'...\n",
                        "Downloading PDB structure '2iah'...\n",
                        "Downloading PDB structure '3csb'...\n",
                        "Downloading PDB structure '2gfa'...\n",
                        "Downloading PDB structure '2ebf'...\n",
                        "Downloading PDB structure '1mmt'...\n",
                        "Downloading PDB structure '1e4g'...\n",
                        "Downloading PDB structure '2ps0'...\n",
                        "Downloading PDB structure '1guf'...\n",
                        "Downloading PDB structure '1btg'...\n",
                        "Downloading PDB structure '1tq9'...\n",
                        "Downloading PDB structure '1rid'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2f5f'...\n",
                        "Downloading PDB structure '1w8n'...\n",
                        "Downloading PDB structure '1dyt'...\n",
                        "Downloading PDB structure '1flz'...\n",
                        "Downloading PDB structure '2cww'...\n",
                        "Downloading PDB structure '1m0d'...\n",
                        "Downloading PDB structure '1w1y'...\n",
                        "Downloading PDB structure '2dpg'...\n",
                        "Downloading PDB structure '1r15'...\n",
                        "Downloading PDB structure '1u8e'...\n",
                        "Downloading PDB structure '1lr8'...\n",
                        "Downloading PDB structure '1mcs'...\n",
                        "Downloading PDB structure '1jyr'...\n",
                        "Downloading PDB structure '1l5b'...\n",
                        "Downloading PDB structure '2qyu'...\n",
                        "Downloading PDB structure '2zgv'...\n",
                        "Downloading PDB structure '3dep'...\n",
                        "Downloading PDB structure '2v8j'...\n",
                        "Downloading PDB structure '3b9d'...\n",
                        "Downloading PDB structure '2epf'...\n",
                        "Downloading PDB structure '1oxu'...\n",
                        "Downloading PDB structure '1t6c'...\n",
                        "Downloading PDB structure '2z3c'...\n",
                        "Downloading PDB structure '1jzr'...\n",
                        "Downloading PDB structure '1jl5'...\n",
                        "Downloading PDB structure '2rhu'...\n",
                        "Downloading PDB structure '1uha'...\n",
                        "Downloading PDB structure '1njt'...\n",
                        "Downloading PDB structure '2qm7'...\n",
                        "Downloading PDB structure '1wd9'...\n",
                        "Downloading PDB structure '1f5n'...\n",
                        "Downloading PDB structure '2one'...\n",
                        "Downloading PDB structure '2hs4'...\n",
                        "Downloading PDB structure '2g25'...\n",
                        "Downloading PDB structure '3bwc'...\n",
                        "Downloading PDB structure '2cn3'...\n",
                        "Downloading PDB structure '2oz5'...\n",
                        "Downloading PDB structure '2gpu'...\n",
                        "Downloading PDB structure '1kph'...\n",
                        "Downloading PDB structure '2zdp'...\n",
                        "Downloading PDB structure '1t48'...\n",
                        "Downloading PDB structure '1vcu'...\n",
                        "Downloading PDB structure '2de3'...\n",
                        "Downloading PDB structure '2nad'...\n",
                        "Downloading PDB structure '2zim'...\n",
                        "Downloading PDB structure '2dy5'...\n",
                        "Downloading PDB structure '2vck'...\n",
                        "Downloading PDB structure '2bu2'...\n",
                        "Downloading PDB structure '2osx'...\n",
                        "Downloading PDB structure '1x55'...\n",
                        "Downloading PDB structure '1of6'...\n",
                        "Downloading PDB structure '3dwr'...\n",
                        "Downloading PDB structure '2q0e'...\n",
                        "Downloading PDB structure '1pyy'...\n",
                        "Downloading PDB structure '2za1'...\n",
                        "Downloading PDB structure '1zen'...\n",
                        "Downloading PDB structure '1b12'...\n",
                        "Downloading PDB structure '2b3d'...\n",
                        "Downloading PDB structure '2dkc'...\n",
                        "Downloading PDB structure '2rkv'...\n",
                        "Downloading PDB structure '1bio'...\n",
                        "Downloading PDB structure '2jcj'...\n",
                        "Downloading PDB structure '1rft'...\n",
                        "Downloading PDB structure '2aq6'...\n",
                        "Downloading PDB structure '2eb8'...\n",
                        "Downloading PDB structure '3bqo'...\n",
                        "Downloading PDB structure '2ag4'...\n",
                        "Downloading PDB structure '2r1r'...\n",
                        "Downloading PDB structure '1kmp'...\n",
                        "Downloading PDB structure '1dj9'...\n",
                        "Downloading PDB structure '1ime'...\n",
                        "Downloading PDB structure '2f3e'...\n",
                        "Downloading PDB structure '1ttj'...\n",
                        "Downloading PDB structure '2a86'...\n",
                        "Downloading PDB structure '1ea6'...\n",
                        "Downloading PDB structure '1elz'...\n",
                        "Downloading PDB structure '2ywf'...\n",
                        "Downloading PDB structure '2gz1'...\n",
                        "Downloading PDB structure '2f9w'...\n",
                        "Downloading PDB structure '1q0q'...\n",
                        "Downloading PDB structure '2iyx'...\n",
                        "Downloading PDB structure '2zdq'...\n",
                        "Downloading PDB structure '2aac'...\n",
                        "Downloading PDB structure '1o0r'...\n",
                        "Downloading PDB structure '1cjw'...\n",
                        "Downloading PDB structure '1dqy'...\n",
                        "Downloading PDB structure '1n8v'...\n",
                        "Downloading PDB structure '2ilb'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1zui'...\n",
                        "Downloading PDB structure '1se3'...\n",
                        "Downloading PDB structure '2cl5'...\n",
                        "Downloading PDB structure '3bqf'...\n",
                        "Downloading PDB structure '2om9'...\n",
                        "Downloading PDB structure '1rxe'...\n",
                        "Downloading PDB structure '3bec'...\n",
                        "Downloading PDB structure '1ww4'...\n",
                        "Downloading PDB structure '1ktg'...\n",
                        "Downloading PDB structure '2ixl'...\n",
                        "Downloading PDB structure '2hv7'...\n",
                        "Downloading PDB structure '2o0j'...\n",
                        "Downloading PDB structure '1i5r'...\n",
                        "Downloading PDB structure '1ein'...\n",
                        "Downloading PDB structure '1l9w'...\n",
                        "Downloading PDB structure '1bli'...\n",
                        "Downloading PDB structure '1k52'...\n",
                        "Downloading PDB structure '1rya'...\n",
                        "Downloading PDB structure '2i4n'...\n",
                        "Downloading PDB structure '2og7'...\n",
                        "Downloading PDB structure '2iom'...\n",
                        "Downloading PDB structure '1l7p'...\n",
                        "Downloading PDB structure '1stb'...\n",
                        "Downloading PDB structure '3brx'...\n",
                        "Downloading PDB structure '2gj5'...\n",
                        "Downloading PDB structure '2z8p'...\n",
                        "Downloading PDB structure '2vrq'...\n",
                        "Downloading PDB structure '2b7j'...\n",
                        "Downloading PDB structure '1y1p'...\n",
                        "Downloading PDB structure '2epn'...\n",
                        "Downloading PDB structure '1juj'...\n",
                        "Downloading PDB structure '1djz'...\n",
                        "Downloading PDB structure '1q6f'...\n",
                        "Downloading PDB structure '2j27'...\n",
                        "Downloading PDB structure '2z1z'...\n",
                        "Downloading PDB structure '2zcq'...\n",
                        "Downloading PDB structure '1k8c'...\n",
                        "Downloading PDB structure '1wpq'...\n",
                        "Downloading PDB structure '1r4z'...\n",
                        "Downloading PDB structure '2ze9'...\n",
                        "Downloading PDB structure '2dpt'...\n",
                        "Downloading PDB structure '2bir'...\n",
                        "Downloading PDB structure '2b51'...\n",
                        "Downloading PDB structure '2oo0'...\n",
                        "Downloading PDB structure '1mqq'...\n",
                        "Downloading PDB structure '2ob2'...\n",
                        "Downloading PDB structure '2c9p'...\n",
                        "Downloading PDB structure '2vdg'...\n",
                        "Downloading PDB structure '1m21'...\n",
                        "Downloading PDB structure '2vf5'...\n",
                        "Downloading PDB structure '1foa'...\n",
                        "Downloading PDB structure '2q1c'...\n",
                        "Downloading PDB structure '1zao'...\n",
                        "Downloading PDB structure '1jxi'...\n",
                        "Downloading PDB structure '1lbm'...\n",
                        "Downloading PDB structure '1akn'...\n",
                        "Downloading PDB structure '9rub'...\n",
                        "Downloading PDB structure '1f31'...\n",
                        "Downloading PDB structure '3cc9'...\n",
                        "Downloading PDB structure '1yvu'...\n",
                        "Downloading PDB structure '1k3i'...\n",
                        "Downloading PDB structure '1yvz'...\n",
                        "Downloading PDB structure '2p7p'...\n",
                        "Downloading PDB structure '1pw6'...\n",
                        "Downloading PDB structure '1ef0'...\n",
                        "Downloading PDB structure '2f48'...\n",
                        "Downloading PDB structure '2ise'...\n",
                        "Downloading PDB structure '2p50'...\n",
                        "Downloading PDB structure '2e3p'...\n",
                        "Downloading PDB structure '1tx2'...\n",
                        "Downloading PDB structure '2sbl'...\n",
                        "Downloading PDB structure '1set'...\n",
                        "Downloading PDB structure '1s4c'...\n",
                        "Downloading PDB structure '2qo0'...\n",
                        "Downloading PDB structure '1v6u'...\n",
                        "Downloading PDB structure '2dby'...\n",
                        "Downloading PDB structure '2orz'...\n",
                        "Downloading PDB structure '1re2'...\n",
                        "Downloading PDB structure '1zyd'...\n",
                        "Downloading PDB structure '1kc7'...\n",
                        "Downloading PDB structure '1fhv'...\n",
                        "Downloading PDB structure '2v6g'...\n",
                        "Downloading PDB structure '2uwy'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1cy0'...\n",
                        "Downloading PDB structure '2oxn'...\n",
                        "Downloading PDB structure '1z2l'...\n",
                        "Downloading PDB structure '1rg2'...\n",
                        "Downloading PDB structure '2zif'...\n",
                        "Downloading PDB structure '2ytz'...\n",
                        "Downloading PDB structure '1uzj'...\n",
                        "Downloading PDB structure '1dqe'...\n",
                        "Downloading PDB structure '2f8d'...\n",
                        "Downloading PDB structure '2d1e'...\n",
                        "Downloading PDB structure '2qfb'...\n",
                        "Downloading PDB structure '2ci6'...\n",
                        "Downloading PDB structure '4jdw'...\n",
                        "Downloading PDB structure '1u8u'...\n",
                        "Downloading PDB structure '1snn'...\n",
                        "Downloading PDB structure '2pqj'...\n",
                        "Downloading PDB structure '2e0n'...\n",
                        "Downloading PDB structure '1qhz'...\n",
                        "Downloading PDB structure '1a8t'...\n",
                        "Downloading PDB structure '2oyr'...\n",
                        "Downloading PDB structure '1gvg'...\n",
                        "Downloading PDB structure '2ojs'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2j6i'...\n",
                        "Downloading PDB structure '1t15'...\n",
                        "Downloading PDB structure '3c2g'...\n",
                        "Downloading PDB structure '2dei'...\n",
                        "Downloading PDB structure '2nrz'...\n",
                        "Downloading PDB structure '1azx'...\n",
                        "Downloading PDB structure '1h8s'...\n",
                        "Downloading PDB structure '1mt6'...\n",
                        "Downloading PDB structure '1rao'...\n",
                        "Downloading PDB structure '2fop'...\n",
                        "Downloading PDB structure '1lvb'...\n",
                        "Downloading PDB structure '1g51'...\n",
                        "Downloading PDB structure '2hrl'...\n",
                        "Downloading PDB structure '1pz7'...\n",
                        "Downloading PDB structure '1k4m'...\n",
                        "Downloading PDB structure '2q7t'...\n",
                        "Downloading PDB structure '1vsf'...\n",
                        "Downloading PDB structure '1xtj'...\n",
                        "Downloading PDB structure '1upk'...\n",
                        "Downloading PDB structure '1fv3'...\n",
                        "Downloading PDB structure '1sdw'...\n",
                        "Downloading PDB structure '1g3y'...\n",
                        "Downloading PDB structure '2gon'...\n",
                        "Downloading PDB structure '2z76'...\n",
                        "Downloading PDB structure '1qyy'...\n",
                        "Downloading PDB structure '1x2h'...\n",
                        "Downloading PDB structure '2fsn'...\n",
                        "Downloading PDB structure '3dbs'...\n",
                        "Downloading PDB structure '1ebf'...\n",
                        "Downloading PDB structure '2jkg'...\n",
                        "Downloading PDB structure '1n4a'...\n",
                        "Downloading PDB structure '2gzs'...\n",
                        "Downloading PDB structure '2a0n'...\n",
                        "Downloading PDB structure '2oek'...\n",
                        "Downloading PDB structure '2jeq'...\n",
                        "Downloading PDB structure '1huj'...\n",
                        "Downloading PDB structure '2j9t'...\n",
                        "Downloading PDB structure '1k0n'...\n",
                        "Downloading PDB structure '2dds'...\n",
                        "Downloading PDB structure '2pmd'...\n",
                        "Downloading PDB structure '3c94'...\n",
                        "Downloading PDB structure '3d5w'...\n",
                        "Downloading PDB structure '3c3o'...\n",
                        "Downloading PDB structure '2vq3'...\n",
                        "Downloading PDB structure '1od2'...\n",
                        "Downloading PDB structure '1h78'...\n",
                        "Downloading PDB structure '2qoq'...\n",
                        "Downloading PDB structure '1fcv'...\n",
                        "Downloading PDB structure '1hvc'...\n",
                        "Downloading PDB structure '4pbg'...\n",
                        "Downloading PDB structure '1pnf'...\n",
                        "Downloading PDB structure '1dkq'...\n",
                        "Downloading PDB structure '1r7y'...\n",
                        "Downloading PDB structure '1nom'...\n",
                        "Downloading PDB structure '2zcc'...\n",
                        "Downloading PDB structure '2ajh'...\n",
                        "Downloading PDB structure '2ce9'...\n",
                        "Downloading PDB structure '1i8q'...\n",
                        "Downloading PDB structure '2eep'...\n",
                        "Downloading PDB structure '1yw1'...\n",
                        "Downloading PDB structure '3cgy'...\n",
                        "Downloading PDB structure '2obm'...\n",
                        "Downloading PDB structure '2ddo'...\n",
                        "Downloading PDB structure '3lkf'...\n",
                        "Downloading PDB structure '2qv7'...\n",
                        "Downloading PDB structure '2hp0'...\n",
                        "Downloading PDB structure '2i22'...\n",
                        "Downloading PDB structure '2d2f'...\n",
                        "Downloading PDB structure '1w15'...\n",
                        "Downloading PDB structure '1pbo'...\n",
                        "Downloading PDB structure '1ido'...\n",
                        "Downloading PDB structure '2oz9'...\n",
                        "Downloading PDB structure '1xwv'...\n",
                        "Downloading PDB structure '2quj'...\n",
                        "Downloading PDB structure '2fav'...\n",
                        "Downloading PDB structure '1spd'...\n",
                        "Downloading PDB structure '1uu2'...\n",
                        "Downloading PDB structure '1lri'...\n",
                        "Downloading PDB structure '1ubn'...\n",
                        "Downloading PDB structure '1v08'...\n",
                        "Downloading PDB structure '1gxz'...\n",
                        "Downloading PDB structure '1xev'...\n",
                        "Downloading PDB structure '2qvm'...\n",
                        "Downloading PDB structure '1x82'...\n",
                        "Downloading PDB structure '2vkl'...\n",
                        "Downloading PDB structure '1ve7'...\n",
                        "Downloading PDB structure '2art'...\n",
                        "Downloading PDB structure '2dso'...\n",
                        "Downloading PDB structure '2zf4'...\n",
                        "Downloading PDB structure '2bo2'...\n",
                        "Downloading PDB structure '1pfr'...\n",
                        "Downloading PDB structure '1nuh'...\n",
                        "Downloading PDB structure '3psr'...\n",
                        "Downloading PDB structure '2rcb'...\n",
                        "Downloading PDB structure '2yvk'...\n",
                        "Downloading PDB structure '1uk9'...\n",
                        "Downloading PDB structure '1i1h'...\n",
                        "Downloading PDB structure '2o74'...\n",
                        "Downloading PDB structure '2vb2'...\n",
                        "Downloading PDB structure '1ui7'...\n",
                        "Downloading PDB structure '2vw1'...\n",
                        "Downloading PDB structure '1qz3'...\n",
                        "Downloading PDB structure '3bgg'...\n",
                        "Downloading PDB structure '1fk1'...\n",
                        "Downloading PDB structure '1ocl'...\n",
                        "Downloading PDB structure '2e7j'...\n",
                        "Downloading PDB structure '2p69'...\n",
                        "Downloading PDB structure '1md9'...\n",
                        "Downloading PDB structure '1w6f'...\n",
                        "Downloading PDB structure '2dq0'...\n",
                        "Downloading PDB structure '2iqx'...\n",
                        "Downloading PDB structure '1za5'...\n",
                        "Downloading PDB structure '1e9l'...\n",
                        "Downloading PDB structure '1t9p'...\n",
                        "Downloading PDB structure '2vvo'...\n",
                        "Downloading PDB structure '2fw3'...\n",
                        "Downloading PDB structure '2fp9'...\n",
                        "Downloading PDB structure '2obc'...\n",
                        "Downloading PDB structure '3cht'...\n",
                        "Downloading PDB structure '2bui'...\n",
                        "Downloading PDB structure '2aef'...\n",
                        "Downloading PDB structure '1hhs'...\n",
                        "Downloading PDB structure '5tnc'...\n",
                        "Downloading PDB structure '1cpx'...\n",
                        "Downloading PDB structure '2f44'...\n",
                        "Downloading PDB structure '1lbl'...\n",
                        "Downloading PDB structure '2cfi'...\n",
                        "Downloading PDB structure '2yzo'...\n",
                        "Downloading PDB structure '1zat'...\n",
                        "Downloading PDB structure '2oa1'...\n",
                        "Downloading PDB structure '1kkr'...\n",
                        "Downloading PDB structure '2o6e'...\n",
                        "Downloading PDB structure '1bug'...\n",
                        "Downloading PDB structure '1dvb'...\n",
                        "Downloading PDB structure '1iaa'...\n",
                        "Downloading PDB structure '2oog'...\n",
                        "Downloading PDB structure '2yu1'...\n",
                        "Downloading PDB structure '1ju4'...\n",
                        "Downloading PDB structure '2vzs'...\n",
                        "Downloading PDB structure '1dxg'...\n",
                        "Downloading PDB structure '2zjf'...\n",
                        "Downloading PDB structure '2qeo'...\n",
                        "Downloading PDB structure '2vg0'...\n",
                        "Downloading PDB structure '1mka'...\n",
                        "Downloading PDB structure '1f9z'...\n",
                        "Downloading PDB structure '1yas'...\n",
                        "Downloading PDB structure '1qaq'...\n",
                        "Downloading PDB structure '2i4c'...\n",
                        "Downloading PDB structure '1ted'...\n",
                        "Downloading PDB structure '1r67'...\n",
                        "Downloading PDB structure '1w8e'...\n",
                        "Downloading PDB structure '1so0'...\n",
                        "Downloading PDB structure '1ii5'...\n",
                        "Downloading PDB structure '2b3h'...\n",
                        "Downloading PDB structure '2v27'...\n",
                        "Downloading PDB structure '1ese'...\n",
                        "Downloading PDB structure '2yzv'...\n",
                        "Downloading PDB structure '2f62'...\n",
                        "Downloading PDB structure '2okn'...\n",
                        "Downloading PDB structure '1im5'...\n",
                        "Downloading PDB structure '3bbh'...\n",
                        "Downloading PDB structure '1l5l'...\n",
                        "Downloading PDB structure '3bf8'...\n",
                        "Downloading PDB structure '1tzc'...\n",
                        "Downloading PDB structure '1uod'...\n",
                        "Downloading PDB structure '2df8'...\n",
                        "Downloading PDB structure '3bu1'...\n",
                        "Downloading PDB structure '2f7v'...\n",
                        "Downloading PDB structure '2qhv'...\n",
                        "Downloading PDB structure '1uj5'...\n",
                        "Downloading PDB structure '2itp'...\n",
                        "Downloading PDB structure '1miz'...\n",
                        "Downloading PDB structure '1k2e'...\n",
                        "Downloading PDB structure '1w5e'...\n",
                        "Downloading PDB structure '1gzf'...\n",
                        "Downloading PDB structure '2ao2'...\n",
                        "Downloading PDB structure '2oei'...\n",
                        "Downloading PDB structure '3diw'...\n",
                        "Downloading PDB structure '1gwm'...\n",
                        "Downloading PDB structure '2uus'...\n",
                        "Downloading PDB structure '1u4m'...\n",
                        "Downloading PDB structure '1rc5'...\n",
                        "Downloading PDB structure '1ok7'...\n",
                        "Downloading PDB structure '1n5z'...\n",
                        "Downloading PDB structure '1g6h'...\n",
                        "Downloading PDB structure '3d32'...\n",
                        "Downloading PDB structure '4gal'...\n",
                        "Downloading PDB structure '1omo'...\n",
                        "Downloading PDB structure '3c03'...\n",
                        "Downloading PDB structure '1apg'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2d3k'...\n",
                        "Downloading PDB structure '2avr'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2d5a'...\n",
                        "Downloading PDB structure '1wn7'...\n",
                        "Downloading PDB structure '2i5r'...\n",
                        "Downloading PDB structure '1fyk'...\n",
                        "Downloading PDB structure '1w1d'...\n",
                        "Downloading PDB structure '3bmy'...\n",
                        "Downloading PDB structure '1tho'...\n",
                        "Downloading PDB structure '2c3h'...\n",
                        "Downloading PDB structure '2oju'...\n",
                        "Downloading PDB structure '1lm3'...\n",
                        "Downloading PDB structure '1dp2'...\n",
                        "Downloading PDB structure '2bl8'...\n",
                        "Downloading PDB structure '2hpl'...\n",
                        "Downloading PDB structure '2peh'...\n",
                        "Downloading PDB structure '2zaa'...\n",
                        "Downloading PDB structure '1gmo'...\n",
                        "Downloading PDB structure '2zpy'...\n",
                        "Downloading PDB structure '2fae'...\n",
                        "Downloading PDB structure '1xzk'...\n",
                        "Downloading PDB structure '2g9a'...\n",
                        "Downloading PDB structure '1y2f'...\n",
                        "Downloading PDB structure '2c3w'...\n",
                        "Downloading PDB structure '1jlk'...\n",
                        "Downloading PDB structure '3c0o'...\n",
                        "Downloading PDB structure '1awi'...\n",
                        "Downloading PDB structure '1lv0'...\n",
                        "Downloading PDB structure '1yfr'...\n",
                        "Downloading PDB structure '1ox9'...\n",
                        "Downloading PDB structure '2ed4'...\n",
                        "Downloading PDB structure '1r6n'...\n",
                        "Downloading PDB structure '1qz2'...\n",
                        "Downloading PDB structure '1jwg'...\n",
                        "Downloading PDB structure '2gvg'...\n",
                        "Downloading PDB structure '1ka2'...\n",
                        "Downloading PDB structure '2qz3'...\n",
                        "Downloading PDB structure '1xrr'...\n",
                        "Downloading PDB structure '1slb'...\n",
                        "Downloading PDB structure '2ft0'...\n",
                        "Downloading PDB structure '1kp4'...\n",
                        "Downloading PDB structure '2d24'...\n",
                        "Downloading PDB structure '2uyq'...\n",
                        "Downloading PDB structure '2hba'...\n",
                        "Downloading PDB structure '2oqn'...\n",
                        "Downloading PDB structure '2c9c'...\n",
                        "Downloading PDB structure '2hyr'...\n",
                        "Downloading PDB structure '2q5y'...\n",
                        "Downloading PDB structure '1mc9'...\n",
                        "Downloading PDB structure '3pmg'...\n",
                        "Downloading PDB structure '3b55'...\n",
                        "Downloading PDB structure '1oek'...\n",
                        "Downloading PDB structure '1ndi'...\n",
                        "Downloading PDB structure '3b4y'...\n",
                        "Downloading PDB structure '1j4x'...\n",
                        "Downloading PDB structure '2zg1'...\n",
                        "Downloading PDB structure '2gxs'...\n",
                        "Downloading PDB structure '1lc3'...\n",
                        "Downloading PDB structure '1zgc'...\n",
                        "Downloading PDB structure '3kiv'...\n",
                        "Downloading PDB structure '3e3z'...\n",
                        "Downloading PDB structure '1gxo'...\n",
                        "Downloading PDB structure '2cbo'...\n",
                        "Downloading PDB structure '2z2p'...\n",
                        "Downloading PDB structure '2bt6'...\n",
                        "Downloading PDB structure '1c80'...\n",
                        "Downloading PDB structure '1d1g'...\n",
                        "Downloading PDB structure '1x2r'...\n",
                        "Downloading PDB structure '3bi7'...\n",
                        "Downloading PDB structure '1qpr'...\n",
                        "Downloading PDB structure '2g2l'...\n",
                        "Downloading PDB structure '2uvo'...\n",
                        "Downloading PDB structure '1a7w'...\n",
                        "Downloading PDB structure '1sqf'...\n",
                        "Downloading PDB structure '1u26'...\n",
                        "Downloading PDB structure '1byh'...\n",
                        "Downloading PDB structure '2o28'...\n",
                        "Downloading PDB structure '1f12'...\n",
                        "Downloading PDB structure '2iry'...\n",
                        "Downloading PDB structure '1c1h'...\n",
                        "Downloading PDB structure '2eff'...\n",
                        "Downloading PDB structure '1jay'...\n",
                        "Downloading PDB structure '2bej'...\n",
                        "Downloading PDB structure '1w8y'...\n",
                        "Downloading PDB structure '2nun'...\n",
                        "Downloading PDB structure '3cb5'...\n",
                        "Downloading PDB structure '1gyx'...\n",
                        "Downloading PDB structure '1zgs'...\n",
                        "Downloading PDB structure '1kpf'...\n",
                        "Downloading PDB structure '2c43'...\n",
                        "Downloading PDB structure '1mjl'...\n",
                        "Downloading PDB structure '2j8g'...\n",
                        "Downloading PDB structure '3cyq'...\n",
                        "Downloading PDB structure '2p8i'...\n",
                        "Downloading PDB structure '2jfk'...\n",
                        "Downloading PDB structure '1ri2'...\n",
                        "Downloading PDB structure '2iic'...\n",
                        "Downloading PDB structure '2i6p'...\n",
                        "Downloading PDB structure '1rv7'...\n",
                        "Downloading PDB structure '2asc'...\n",
                        "Downloading PDB structure '1ons'...\n",
                        "Downloading PDB structure '1sly'...\n",
                        "Downloading PDB structure '1xng'...\n",
                        "Downloading PDB structure '3dbb'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '2obt'...\n",
                        "Downloading PDB structure '4pad'...\n",
                        "Downloading PDB structure '1tkg'...\n",
                        "Downloading PDB structure '1amw'...\n",
                        "Downloading PDB structure '2eal'...\n",
                        "Downloading PDB structure '1wk8'...\n",
                        "Downloading PDB structure '2ogy'...\n",
                        "Downloading PDB structure '1om9'...\n",
                        "Downloading PDB structure '2f6d'...\n",
                        "Downloading PDB structure '2brs'...\n",
                        "Downloading PDB structure '1ucg'...\n",
                        "Downloading PDB structure '1kae'...\n",
                        "Downloading PDB structure '2r7d'...\n",
                        "Downloading PDB structure '1c8y'...\n",
                        "Downloading PDB structure '1w2o'...\n",
                        "Downloading PDB structure '1t02'...\n",
                        "Downloading PDB structure '2o2z'...\n",
                        "Downloading PDB structure '3d9p'...\n",
                        "Downloading PDB structure '1mxi'...\n",
                        "Downloading PDB structure '1gym'...\n",
                        "Downloading PDB structure '1x8c'...\n",
                        "Downloading PDB structure '2a0b'...\n",
                        "Downloading PDB structure '2f4f'...\n",
                        "Downloading PDB structure '2nt9'...\n",
                        "Downloading PDB structure '2vfk'...\n",
                        "Downloading PDB structure '2dvm'...\n",
                        "Downloading PDB structure '3c8d'...\n",
                        "Downloading PDB structure '1oby'...\n",
                        "Downloading PDB structure '1exf'...\n",
                        "Downloading PDB structure '1qgi'...\n",
                        "Downloading PDB structure '2r8a'...\n",
                        "Downloading PDB structure '1gyb'...\n",
                        "Downloading PDB structure '1oa7'...\n",
                        "Downloading PDB structure '2faq'...\n",
                        "Downloading PDB structure '2isi'...\n",
                        "Downloading PDB structure '3mat'...\n",
                        "Downloading PDB structure '2j17'...\n",
                        "Downloading PDB structure '2hw1'...\n",
                        "Downloading PDB structure '1qj8'...\n",
                        "Downloading PDB structure '1ohe'...\n",
                        "Downloading PDB structure '2fc0'...\n",
                        "Downloading PDB structure '1o6g'...\n",
                        "Downloading PDB structure '3db3'...\n",
                        "Downloading PDB structure '1czs'...\n",
                        "Downloading PDB structure '1nkt'...\n",
                        "Downloading PDB structure '3c1y'...\n",
                        "Downloading PDB structure '1w2t'...\n",
                        "Downloading PDB structure '2cwh'...\n",
                        "Downloading PDB structure '2glu'...\n",
                        "Downloading PDB structure '3bib'...\n",
                        "Downloading PDB structure '1ek2'...\n",
                        "Downloading PDB structure '2q6v'...\n",
                        "Downloading PDB structure '2d0c'...\n",
                        "Downloading PDB structure '2uy3'...\n",
                        "Downloading PDB structure '1uc9'...\n",
                        "Downloading PDB structure '2sqc'...\n",
                        "Downloading PDB structure '2p36'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1h16'...\n",
                        "Downloading PDB structure '1efy'...\n",
                        "Downloading PDB structure '2a33'...\n",
                        "Downloading PDB structure '1lf9'...\n",
                        "Downloading PDB structure '1fee'...\n",
                        "Downloading PDB structure '2ref'...\n",
                        "Downloading PDB structure '2q71'...\n",
                        "Downloading PDB structure '2e8e'...\n",
                        "Downloading PDB structure '1rq5'...\n",
                        "Downloading PDB structure '2gwl'...\n",
                        "Downloading PDB structure '1jbz'...\n",
                        "Downloading PDB structure '2f1t'...\n",
                        "Downloading PDB structure '2bko'...\n",
                        "Downloading PDB structure '1ogo'...\n",
                        "Downloading PDB structure '1h2f'...\n",
                        "Downloading PDB structure '1o9w'...\n",
                        "Downloading PDB structure '1l0y'...\n",
                        "Downloading PDB structure '2jhn'...\n",
                        "Downloading PDB structure '2ccj'...\n",
                        "Downloading PDB structure '3crq'...\n",
                        "Downloading PDB structure '2ewe'...\n",
                        "Downloading PDB structure '1ll2'...\n",
                        "Downloading PDB structure '1ltz'...\n",
                        "Downloading PDB structure '3d5e'...\n",
                        "Downloading PDB structure '1c3r'...\n",
                        "Downloading PDB structure '1c7s'...\n",
                        "Downloading PDB structure '1mmu'...\n",
                        "Downloading PDB structure '2hzq'...\n",
                        "Downloading PDB structure '2e20'...\n",
                        "Downloading PDB structure '1eg4'...\n",
                        "Downloading PDB structure '2dtn'...\n",
                        "Downloading PDB structure '1bib'...\n",
                        "Downloading PDB structure '2jcr'...\n",
                        "Downloading PDB structure '1b74'...\n",
                        "Downloading PDB structure '1v9a'...\n",
                        "Downloading PDB structure '2fv1'...\n",
                        "Downloading PDB structure '1nw5'...\n",
                        "Downloading PDB structure '3b9o'...\n",
                        "Downloading PDB structure '1ddt'...\n",
                        "Downloading PDB structure '1vci'...\n",
                        "Downloading PDB structure '1fwu'...\n",
                        "Downloading PDB structure '2rb4'...\n",
                        "Downloading PDB structure '2vdj'...\n",
                        "Downloading PDB structure '1ne9'...\n",
                        "Downloading PDB structure '2v3k'...\n",
                        "Downloading PDB structure '1ymf'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1h9r'...\n",
                        "Downloading PDB structure '1ee9'...\n",
                        "Downloading PDB structure '2hbm'...\n",
                        "Downloading PDB structure '2j0b'...\n",
                        "Downloading PDB structure '2vx7'...\n",
                        "Downloading PDB structure '2cjp'...\n",
                        "Downloading PDB structure '2g09'...\n",
                        "Downloading PDB structure '1ty2'...\n",
                        "Downloading PDB structure '1kwf'...\n",
                        "Downloading PDB structure '2jfv'...\n",
                        "Downloading PDB structure '2cx1'...\n",
                        "Downloading PDB structure '1kug'...\n",
                        "Downloading PDB structure '1pvs'...\n",
                        "Downloading PDB structure '1q6i'...\n",
                        "Downloading PDB structure '2yvp'...\n",
                        "Downloading PDB structure '2p0h'...\n",
                        "Downloading PDB structure '3cja'...\n",
                        "Downloading PDB structure '2bvt'...\n",
                        "Downloading PDB structure '2cbg'...\n",
                        "Downloading PDB structure '2hl3'...\n",
                        "Downloading PDB structure '1w1a'...\n",
                        "Downloading PDB structure '1l8x'...\n",
                        "Downloading PDB structure '2ev9'...\n",
                        "Downloading PDB structure '1w9w'...\n",
                        "Downloading PDB structure '1lsp'...\n",
                        "Downloading PDB structure '2jh7'...\n",
                        "Downloading PDB structure '2e1t'...\n",
                        "Downloading PDB structure '1yd4'...\n",
                        "Downloading PDB structure '1tf2'...\n",
                        "Downloading PDB structure '2cir'...\n",
                        "Downloading PDB structure '1pgn'...\n",
                        "Downloading PDB structure '3cyi'...\n",
                        "Downloading PDB structure '3ct5'...\n",
                        "Downloading PDB structure '1g8t'...\n",
                        "Downloading PDB structure '2ep9'...\n",
                        "Desired structure doesn't exists\n",
                        "Downloading PDB structure '1ifu'...\n",
                        "Downloading PDB structure '1wop'...\n",
                        "Downloading PDB structure '2nsf'...\n",
                        "Downloading PDB structure '1aur'...\n",
                        "Downloading PDB structure '2r5m'...\n",
                        "Downloading PDB structure '1jlx'...\n",
                        "Downloading PDB structure '1i9z'...\n",
                        "Downloading PDB structure '2fk1'...\n",
                        "Downloading PDB structure '2r68'...\n",
                        "Downloading PDB structure '1g5t'...\n",
                        "Downloading PDB structure '1zsh'...\n",
                        "Downloading PDB structure '2g7f'...\n",
                        "Downloading PDB structure '1j25'...\n",
                        "Downloading PDB structure '2o48'...\n",
                        "Downloading PDB structure '2vl2'...\n",
                        "Downloading PDB structure '3byn'...\n",
                        "Downloading PDB structure '2ag8'...\n",
                        "Downloading PDB structure '2qth'...\n",
                        "Downloading PDB structure '1hg2'...\n",
                        "Downloading PDB structure '1u4j'...\n"
                    ]
                }
            ],
            "source": [
                "pdbl = PDBList()\n",
                "pdb_list = pd.concat([structural_rearrangement_data['Free PDB'], structural_rearrangement_data['Bound PDB']]).unique()\n",
                "\n",
                "pdbl.download_pdb_files(pdb_list, obsolete=False, pdir='pdbs/', file_format='pdb', overwrite=True)\n",
                "\n",
                "#Rename PDB files from .ent to .pdb\\n\n",
                "!cd pdbs/; for f in *.ent; do mv -- \"$f\" \"${f%.ent}.pdb\"; done\n",
                "# Remove pdb prefix from PDB file names (e.g. pdb20jj.ent -> 20jj.pdb)\\n\",\n",
                "!cd pdbs/; for x in *; do mv $x `echo $x | cut -c 4-`; done"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": 27,
            "metadata": {},
            "outputs": [
                {
                    "data": {
                        "text/plain": [
                            "1541"
                        ]
                    },
                    "execution_count": 27,
                    "metadata": {},
                    "output_type": "execute_result"
                }
            ],
            "source": [
                "# Download Ligands"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": 19,
            "metadata": {},
            "outputs": [],
            "source": [
                "## Make Graphs\n",
                "import os"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": 25,
            "metadata": {},
            "outputs": [
                {
                    "data": {
                        "text/plain": [
                            "Series([], Name: Free PDB, dtype: object)"
                        ]
                    },
                    "execution_count": 25,
                    "metadata": {},
                    "output_type": "execute_result"
                }
            ],
            "source": [
                "structural_rearrangement_data['Free PDB'].loc[structural_rearrangement_data['Free PDB'].isin(f)]"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": 31,
            "metadata": {},
            "outputs": [
                {
                    "data": {
                        "text/plain": [
                            "43     2h98\n",
                            "190    2gu9\n",
                            "283    2bg1\n",
                            "307    1q4o\n",
                            "514    1il5\n",
                            "625    3cey\n",
                            "688    2glb\n",
                            "739    1yks\n",
                            "774    2dpo\n",
                            "Name: Free PDB, dtype: object"
                        ]
                    },
                    "execution_count": 31,
                    "metadata": {},
                    "output_type": "execute_result"
                }
            ],
            "source": [
                "f = [f[:-4] for f in os.listdir('pdbs')]\n",
                "structural_rearrangement_data['Free PDB'].loc[~structural_rearrangement_data['Bound PDB'].isin(f)]"
            ]
        },
        {
            "cell_type": "code",
            "execution_count": null,
            "metadata": {},
            "outputs": [],
            "source": []
        }
    ],
    "metadata": {
        "kernelspec": {
            "display_name": "Python 3",
            "language": "python",
            "name": "python3"
        },
        "language_info": {
            "codemirror_mode": {
                "name": "ipython",
                "version": 3
            },
            "file_extension": ".py",
            "mimetype": "text/x-python",
            "name": "python",
            "nbconvert_exporter": "python",
            "pygments_lexer": "ipython3",
            "version": "3.7.4"
        },
        "nbsphinx": {
            "execute": "never"
        }
    },
    "nbformat": 4,
    "nbformat_minor": 4
}
